{"id":6873,"date":"2025-06-02T18:10:57","date_gmt":"2025-06-03T00:10:57","guid":{"rendered":"https:\/\/meximagingworkshops.org.mx\/?page_id=6873"},"modified":"2025-06-02T19:27:35","modified_gmt":"2025-06-03T01:27:35","slug":"mb11-analisis-de-imagenes-biologicas-de-conceptos-fundamentales-a-la-inteligencia-artificial","status":"publish","type":"page","link":"https:\/\/meximagingworkshops.org.mx\/es\/mb11-analisis-de-imagenes-biologicas-de-conceptos-fundamentales-a-la-inteligencia-artificial\/","title":{"rendered":"MB11: An\u00e1lisis de Im\u00e1genes Biol\u00f3gicas \u2013 de Conceptos Fundamentales a la Inteligencia Artificial"},"content":{"rendered":"
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Resumen<\/b><\/p>

El programa <\/span>Connecting the Mexican Bioimaging Community<\/span><\/i> ha desarrollado, a lo largo de varias ediciones, una serie de talleres orientados a fortalecer las capacidades nacionales en microscop\u00eda aplicada al estudio biol\u00f3gico. Cada taller ha abordado distintas etapas del trabajo con muestras biol\u00f3gicas: desde su preparaci\u00f3n, adquisici\u00f3n de im\u00e1genes mediante t\u00e9cnicas avanzadas como microscop\u00eda confocal y electr\u00f3nica, hasta su an\u00e1lisis e interpretaci\u00f3n. Este enfoque integral ha buscado acompa\u00f1ar el ciclo de vida completo de im\u00e1genes cient\u00edficas. <\/span>Mexican Bioimaging Workshops 11 \u2013 Bioimage Analysis: From Fundamental Concepts to Artificial Intelligence<\/span><\/i> representa la \u00faltima edici\u00f3n de este recorrido formativo, al enfocarse en una etapa cr\u00edtica y cada vez m\u00e1s relevante: el an\u00e1lisis computacional de im\u00e1genes microsc\u00f3picas, incorporando herramientas de inteligencia artificial (IA) que est\u00e1n transformando la pr\u00e1ctica cient\u00edfica y, particularmente, el campo de la microscop\u00eda. A trav\u00e9s de sesiones te\u00f3ricas y pr\u00e1cticas, el taller ofrece formaci\u00f3n en el uso de herramientas como ImageJ\/Fiji, Ilastik, DeepImageJ, Bioimage Model Zoo, Catalyst y TrackMate, as\u00ed como en conceptos clave como segmentaci\u00f3n, anotaci\u00f3n, procesamiento por lotes y aprendizaje profundo (incluyendo redes neuronales convolucionales). Estas habilidades permiten a los participantes extraer, cuantificar y analizar informaci\u00f3n biol\u00f3gica de manera automatizada y reproducible. Adem\u00e1s de su componente t\u00e9cnico, MBW11 tambi\u00e9n incorpora espacios para discutir buenas pr\u00e1cticas y consideraciones \u00e9ticas en la aplicaci\u00f3n de IA al an\u00e1lisis de im\u00e1genes biol\u00f3gicas, promoviendo un uso cr\u00edtico y responsable de estas tecnolog\u00edas. Este taller concluye con una jornada de divulgaci\u00f3n cient\u00edfica abierta al p\u00fablico, reafirmando el compromiso del programa con el acceso abierto al conocimiento y su impacto social. M\u00e1s all\u00e1 de su dimensi\u00f3n t\u00e9cnica, MBW11 representa el cierre de un proceso formativo que ha acompa\u00f1ado diversas etapas del trabajo con microscop\u00eda biol\u00f3gica, y consolida una comunidad nacional con competencias robustas en an\u00e1lisis de datos, pensamiento interdisciplinario y uso cr\u00edtico de tecnolog\u00edas emergentes.<\/span><\/p><\/div>\n \t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t

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Summary<\/b><\/p>

The <\/span>Connecting the Mexican Bioimaging Community<\/span><\/i> program has developed, over several editions, a series of workshops aimed at strengthening national capacities in microscopy applied to biological research. Each workshop has addressed different stages of working with biological samples\u2014from sample preparation and image acquisition using advanced techniques such as confocal and electron microscopy, to image processing and interpretation. This comprehensive approach has been designed to support the entire life cycle of scientific imaging. <\/span>Mexican Bioimaging Workshops 11 \u2013 Bioimage Analysis: From Fundamental Concepts to Artificial Intelligence<\/span><\/i> marks the most recent stage of this training journey, focusing on a critical and increasingly relevant phase: the computational analysis of microscopic images, incorporating artificial intelligence (AI) tools that are transforming scientific practice, particularly in the field of microscopy. Through both theoretical and practical sessions, the workshop provides training in the use of software such as ImageJ\/Fiji, Ilastik, DeepImageJ, Bioimage Model Zoo, Catalyst, and TrackMate, as well as in key concepts such as segmentation, annotation, batch processing, and deep learning, including convolutional neural networks. These skills enable participants to extract, quantify, and analyze biological information in an automated and reproducible manner. In addition to its technical focus, MBW11 includes opportunities to discuss best practices and ethical considerations regarding the application of AI in the analysis of biological images, encouraging a critical and responsible use of these emerging technologies. The workshop concludes with a public science outreach event, reaffirming the program\u2019s commitment to open access to knowledge and its broader social impact. Beyond its technical dimension, MBW11 represents the culmination of a formative process that has supported multiple stages of work in biological microscopy, and solidifies a national community with strong competencies in data analysis, interdisciplinary thinking, and the critical application of emerging technologies.<\/span><\/p><\/div>\n \t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t

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Speakers<\/b><\/p>

  • Federico Lecumberry (Universidad de la Rep\u00fablica, Uruguay)<\/span><\/li>
  • Francisco de Izaguirre (Universidad de la Rep\u00fablica, Uruguay)<\/span><\/li>
  • Paul Hern\u00e1ndez (UASLP)<\/span><\/li>
  • Ad\u00e1n Guerrero (LNMA-UNAM)<\/span><\/li>
  • Christopher Wood (LNMA-UNAM)<\/span><\/li>
  • Diego Delgado (LNMA-CICESE)<\/span><\/li><\/ul><\/div>\n \t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t
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    Topics: Fundamentals of Bioimage Analysis<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t
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    MB11: An\u00e1lisis de Im\u00e1genes Biol\u00f3gicas \u2013 de Conceptos Fundamentales a la Inteligencia Artificial – DAY 1<\/div>\n
    August 6, 2025<\/div>\n <\/div>\n <\/div>\n
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    Good Morning<\/h3>\n
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    Welcome and Participants Introduction<\/h3>\n

    Getting to Know the Participants\u2019 Research<\/p>\n<\/div>\n <\/div>\n <\/div>\n <\/div>\n

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    Basic Concepts of Imaging<\/h3>\n

    Fundamentals of Bioimaging, Images, Data Types, Look-up Tables, Calibration, Multiple-channel Images, Contrast Enhancement.<\/p>\n<\/div>\n <\/div>\n <\/div>\n <\/div>\n

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    Q&A<\/h3>\n
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    Coffee Break<\/h3>\n
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    Advanced Concepts of Imaging<\/h3>\n

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    Practical Session: ImageJ\/Fiji<\/h3>\n

    Basic Operations, Opening an Image, Changing the Look-up Table, Adjusting Contrast, Identifying the Histogram, Applying Noise Reduction Filters.<\/p>\n<\/div>\n <\/div>\n <\/div>\n <\/div>\n

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    Fundamentals of Segmentation<\/h3>\n

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    Practical Session: ImageJ\/Fiji<\/h3>\n

    Practice on Fundamentals of Segmentation
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    Moderator: Pa\u00fal Hern\u00e1ndez & Federico Lecumberry<\/b><\/p><\/div>\n \t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t

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    Topics: Machine Learning in Bioimaging<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t
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    MB11: An\u00e1lisis de Im\u00e1genes Biol\u00f3gicas \u2013 de Conceptos Fundamentales a la Inteligencia Artificial – DAY 2<\/div>\n
    August 7, 2025<\/div>\n <\/div>\n <\/div>\n <\/div>\n
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    Fundamentals of Bioimaging and Machine Learning<\/h3>\n

    Examples of AI Applications in Bioimaging
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    Practical Session: Introduction to Ilastik<\/h3>\n

    Description of the Graphic Interface.
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    Q&A<\/h3>\n
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    Coffee Break<\/h3>\n
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    Practical Session: Introduction to Ilastik<\/h3>\n

    Description of the Graphic Interface.
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    Q&A<\/h3>\n
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    Practice: Batch Processing in Ilastik and Fiji<\/h3>\n

    Introduction to Batch Processing: Ilastik and Fiji<\/p>\n<\/div>\n <\/div>\n <\/div>\n <\/div>\n

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    Fundamentals of Deep Learning, Neural Networks and Convolutional Neural Networks.<\/h3>\n

    Brief Description of the Fundamentals of Deep Learning.<\/p>\n<\/div>\n <\/div>\n <\/div>\n <\/div>\n

    \n
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    \n <\/i><\/span>\n \n 2:00 pm - 3:30 pm <\/span>\n <\/div>\n
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    Lunch<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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    \n\n
    \n
    \n <\/i><\/span>\n \n 3:30 pm - 4:50 pm <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
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    Theoretical and Practical Session: Introduction to DeepImageJ<\/h3>\n

    Presentation of the DeepImageJ Plugin for ImageJ\/FIJI
    \nModel Execution<\/p>\n<\/div>\n <\/div>\n <\/div>\n <\/div>\n

    \n
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    \n <\/i><\/span>\n \n 4:50 pm - 6:10 pm <\/span>\n <\/div>\n
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    Practical session: Bioimage Model Zoo<\/h3>\n

    Webpage Description
    \nModel Execution<\/p>\n<\/div>\n <\/div>\n <\/div>\n <\/div>\n

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    \n <\/i><\/span>\n \n 6:10 pm - 7:00 pm <\/span>\n <\/div>\n <\/div>\n\n
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    Practical Session: Particle Tracking in TrackMate<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n \t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t
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    Moderator:Pa\u00fal Hern\u00e1ndez & Federico Lecumberry<\/b><\/p><\/div>\n \t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t

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    Topics: Deep Learning and Annotation for Image Analysis\n<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t
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    \n
    MB11: An\u00e1lisis de Im\u00e1genes Biol\u00f3gicas \u2013 de Conceptos Fundamentales a la Inteligencia Artificial – DAY 3<\/div>\n
    August 8, 2025<\/div>\n <\/div>\n <\/div>\n <\/div>\n
    \n
    \n
    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 8:45 am - 9:00 am <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Good Morning<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n
    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 9:00 pm - 10:00 am <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Importance of Image Annotation in Supervised Learning Images<\/h3>\n

    Introduction to Annotation with AnnotatorJ
    \nPractice: Image Annotation with Annotator J<\/p>\n<\/div>\n <\/div>\n <\/div>\n <\/div>\n

    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 10:00 am - 10:20 am <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Introduction to Catalyst<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n
    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 10:20 am - 11:00 am <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Practice: Training an AI Model for Segmentation in Catalyst<\/h3>\n

    Parameter Adjustments
    \nModel Training<\/p>\n<\/div>\n <\/div>\n <\/div>\n <\/div>\n

    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 11:00 am - 11:30 am <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Coffee Break<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n
    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 11:30 am - 1:00 pm <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Practice: Training and Application of an AI Model for Segmentation in Catalyst<\/h3>\n

    Model Training
    \nModel Application<\/p>\n<\/div>\n <\/div>\n <\/div>\n <\/div>\n

    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 1:00 pm - 2:00 pm <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    AA Softwares and Applications for Bioimaging<\/h3>\n

    DL4MicEverywhere, StarDist, QuPath, Microscopy Image Analyzer, IROSC.<\/p>\n<\/div>\n <\/div>\n <\/div>\n <\/div>\n

    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 2:00 pm - 3:30 pm <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Lunch<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n
    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 3:30 pm - 4:00 pm <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Best Practices in the Use of Scientific Images<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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    \n\n
    \n
    \n <\/i><\/span>\n \n 4:00 pm - 4:10 pm <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Q&A<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n
    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 4:00 pm - 4:30 pm <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Ethical Aspects of Applying AA, Considerations in Scientific Publications, and Its Relationship with Artificial Intelligence<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n
    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 4:30 pm - 4:40 pm <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Q&A<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n
    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 4:40 pm - 5:10 pm <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Group Photo<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n
    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 5:10 pm - 6:20 pm <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Title<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n
    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 6:20 pm - 6:30 pm <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Closing of the 11th Mexican Bioimaging Workshops<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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    \n\n
    \n
    \n <\/i><\/span>\n \n 7:00 pm - 8:00 pm <\/span>\n <\/div>\n <\/div>\n\n
    \n

    Dinner<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n \t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t
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    Moderator:<\/b> Pa\u00fal Hern\u00e1ndez<\/b><\/p><\/div>\n \t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t

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    <\/div>\n\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t
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    Outreach 11<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t
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    \n
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    \n
    \n
    MB11: An\u00e1lisis de Im\u00e1genes Biol\u00f3gicas \u2013 de Conceptos Fundamentales a la Inteligencia Artificial – DAY 4<\/div>\n
    August 9, 2025<\/div>\n <\/div>\n <\/div>\n <\/div>\n
    \n
    \n
    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 12:00 pm - 4:00 pm <\/span>\n <\/div>\n
    \n <\/i><\/span><\/span>\n <\/div>\n <\/div>\n\n
    \n

    Outreach 11: Microsmos, the microscopic secrets of Playa Hermosa<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n
    \n
    \n\n
    \n
    \n <\/i><\/span>\n \n 4:00 pm - 5:00 pm <\/span>\n <\/div>\n <\/div>\n\n
    \n

    Lunch<\/h3>\n
    <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n \t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>","protected":false},"excerpt":{"rendered":"

    Resumen El programa Connecting the Mexican Bioimaging Community ha desarrollado, a lo largo de varias ediciones, una serie de talleres orientados a fortalecer las capacidades nacionales en microscop\u00eda aplicada al estudio biol\u00f3gico. Cada taller ha abordado distintas etapas del trabajo con muestras biol\u00f3gicas: desde su preparaci\u00f3n, adquisici\u00f3n de im\u00e1genes mediante t\u00e9cnicas avanzadas como microscop\u00eda confocal … Read More “Day 1”<\/span><\/a><\/span><\/p>","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"om_disable_all_campaigns":false,"inline_featured_image":false,"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"class_list":["post-6873","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/meximagingworkshops.org.mx\/es\/wp-json\/wp\/v2\/pages\/6873","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/meximagingworkshops.org.mx\/es\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/meximagingworkshops.org.mx\/es\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/meximagingworkshops.org.mx\/es\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/meximagingworkshops.org.mx\/es\/wp-json\/wp\/v2\/comments?post=6873"}],"version-history":[{"count":27,"href":"https:\/\/meximagingworkshops.org.mx\/es\/wp-json\/wp\/v2\/pages\/6873\/revisions"}],"predecessor-version":[{"id":6919,"href":"https:\/\/meximagingworkshops.org.mx\/es\/wp-json\/wp\/v2\/pages\/6873\/revisions\/6919"}],"wp:attachment":[{"href":"https:\/\/meximagingworkshops.org.mx\/es\/wp-json\/wp\/v2\/media?parent=6873"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}